Things to note for version 1.2:
-Module names can only contain a-z, A-Z or 0-9 (next release will have this fixed)
-Virtuemart must have all instances of "$mosConfig_live_site" replaced with "JURI :: base()" when used with sh404SEF and JotCache
-Plugin order is important, things like JCH Optimise (which strip out the HTML comment tag) should be placed in order AFTER JotCache or module exclusions will not work.
-Make sure to clear all site and browser caches and enable the debug cookie (mark) if things don't look right!